On your own
Run the pipeline on your own machines or your own cloud. It arrives ready to run, and your data stays yours.
Ready to run · Validated to work
Vetted bioinformatics pipelines.
Every pipeline we release is validated to work before it reaches you. Run it on your own infrastructure, or send us your data and we run it for you.
How to work with us
Two ways to use them
Run by us
Send us your data and we send back the results. No setup on your side.
Pipelines
The pipelines, and where each one stands
Each pipeline is listed with its status: planned, under validation, or validated by reproducing the results of a published study.
Bulk RNA-seq differential expression
Differential gene expression between conditions from bulk RNA-seq data.
- Input
- Paired-end RNA-seq reads from samples in two or more conditions.
- Output
- The log2 fold change and its significance for every gene, for each comparison between conditions.
This pipeline has been validated. See the validation
Single-cell RNA-seq
Identification of cell types and their proportions from single-cell RNA-seq data.
This pipeline is planned.
Germline variant calling
Detection of inherited variants from whole-genome or exome sequencing data.
This pipeline is planned.
ATAC-seq
Identification of regions of accessible chromatin from ATAC-seq data.
This pipeline is planned.
ChIP-seq
Identification of protein–DNA binding sites from ChIP-seq data.
This pipeline is planned.
Microbiome profiling
Taxonomic composition and relative abundance of microbial communities from sequencing data.
This pipeline is planned.
Somatic variant calling
Detection of somatic mutations in tumour samples relative to a matched normal sample.
This pipeline is planned.
Who it is for
For teams that need results they can rely on
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Research labs
Spend your time on the biology, not on getting a pipeline to work.
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Core facilities
Offer the people you serve analyses you can stand behind.
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Biotech teams
Move from data to decisions without building the tooling first.
What vetted means
Released only once it works.
A pipeline is released only once it has been validated to work. You start from results you can rely on, not from a pipeline you still have to check yourself.
Have data waiting on a pipeline?
Tell us what you are working on. We will tell you how we can help.
Talk to us